Document Type
Article
Publication Date
1-5-2024
Publication Title
Cancer Epidemiology, Biomarkers & Prevention
Abstract
BACKGROUND: Clinical, molecular, and genetic epidemiology studies displayed remarkable differences between ever- and never-smoking lung cancer. METHODS: We conducted a stratified multi-population (European, East Asian, and African descent) association study on 44,823 ever-smokers and 20,074 never-smokers to identify novel variants that were missed in the non-stratified analysis. Functional analysis including eQTL colocalization and DNA damage assays, and annotation studies were conducted to evaluate the functional roles of the variants. We further evaluated the impact of smoking quantity on lung cancer risk for the variants associated with ever-smoking lung cancer. RESULTS: Five novel independent loci, GABRA4, inter-genic region 12q24.33, LRRC4C, LINC01088, and LCNL1 were identified with the association at two or three populations (P < 5x10-8). Further functional analysis provided multiple lines of evidence suggesting the variants affect lung cancer risk through excessive DNA damage (GABRA4) or cis-regulation of gene expression (LCNL1). The risk of variants from 12 independent regions, including the well-known CHRNA5, associated with ever-smoking lung cancer was evaluated for never-smokers, light-smokers (packyear < = 20), and moderate-to-heavy-smokers (packyear > 20). Different risk patterns were observed for the variants among the different groups by smoking behavior. CONCLUSIONS: We identified novel variants associated with lung cancer in only ever- or never-smoking groups that were missed by prior main-effect association studies. IMPACT: Our study highlights the genetic heterogeneity between ever- and never-smoking lung cancer and provides etiological insights into the complicated genetic architecture of this deadly cancer.
First Page
389
Last Page
399
PubMed ID
38180474
Volume
33
Issue
3
Creative Commons License
This work is licensed under a Creative Commons Attribution-NonCommercial-No Derivative Works 4.0 International License.
Recommended Citation
Li, Yafang; Xiao, Xiangjun; Li, Jianrong; Han, Younghun; Cheng, Chao; Fernandes, Gail F.; Slewitzke, Shannon E.; Rosenberg, Susan M.; Zhu, Meng; Byun, Jinyoung; Bossé, Yohan; McKay, James D.; Albanes, Demetrios; Lam, Stephan; Tardon, Adonina; Chen, Chu; Bojesen, Stig E.; Landi, Maria T.; Johansson, Mattias; Risch, Angela; Bickeböller, Heike; Wichmann, H-Erich; Christiani, David C.; Rennert, Gad; Arnold, Susanne M.; Goodman, Gary E.; Field, John K.; Mandal, Diptasri; and al, et, "Lung cancer in ever- and never-smokers: findings from multi-population GWAS studies" (2024). School of Graduate Studies Faculty Publications. 235.
https://digitalscholar.lsuhsc.edu/sogs_facpubs/235
Included in
Epidemiology Commons, Genetic Processes Commons, Medical Genetics Commons, Neoplasms Commons